I have just installed Affiliates and set it up to work with Pro Sites. I just ran a test to check everything was working - I can see that the click, sign up and paid member has all been recorded correctly, and it's all been logged in the network dashboard, however, when I went to pay out nothing happened.
I tried to pay out by going to "Affiliate > Affiliate reports" and click on "Pay Balance" on the account that I just tested.
I also tried selecting the affiliate account and clicking the "Pay Balances" button on the top right - nothing happened except an array was shown like this:
I also noticed that the Export Payments button just downloads an empty txt file.
Can you please take a look at why this might not be working.
After a couple more tests, I noticed that the recorded number of "Clicks" and "Sign ups" is double what it should be - I've only run 3 tests, each with 1 click and 1 sign up each, so these numbers should match the number of paid signups (i.e. 3).
I also noticed that the top refferers box remains empty, saying "You have no referred visits this month."