Categories not copying to new blogs in New Blog Templates


I'm using New Blog Templates plugin. When I create a new site the categories I have selected for WooSlider and WooFeatures on the template do not copy to the new blog.

I have this setup on many of my other networks and they have always copied fine. For example, the images and slides for slider are copied, but none of them have the categories assigned to them, so the slider is empty. Any help would be greatly appreciated.

Thanks, Chris