Cloner Multi network setup

I have cloner installed in a multi netowrk, but when I clone a subsite a lot of issues happen, for example, i can't enable/disable plugins on the page, the new subsite that has been cloned does not show up in the original network.
It is cloned onto another network in addition, the cloned subsite network active plugins are not the same as the original network. For example, instead of inland. MISITIO having the network settings of "misitio" it will have the network settings of "vilagespring".