Cloner Tool not updating sticky list links

I am using the cloner tool to create a clone of a sub-site within my multi-site. The links are not updated in my sticky lists buttons (this is a gravity forms plugin). Why is this happenning? Here is a video describing my issues:

https://infoflomobile.tinytake.com/sf/MTIwNzY4OF80NjM0NzI4