CustomPress + Genesis Framework


I am having some issues integrating CustomPress within the Genesis Framework/Theme. I have created my custom fields and registered each shortcode in the functions.php file as suggested in other threads so that they can be used by the Genesis theme. The raw content is now showing up in my posts, however, I'm not sure how I can work with the shortcodes within the php file and style them. Any help would be appreciated.

Thank you!