Does Auto Blog work with New Blog Templates?

I'm trying this in a multisite environment. I have a template I've created using New Blog Templates, that has Auto Blog set up on it. The idea being that I want to copy over the Auto Blog settings to my new sites automatically. Trouble is that when the new sites are created, the RSS Feed settings in Auto Blog are not. All the existing blog content is copied over, including settings for other plugins, just not the settings for Auto Blog. Should this work or are these plugins incompatible?