Google Analytics plugin working with one theme but not another?

We have the latest (8/14/09) analytics plugin installed on MU 2.8.4a sites running 2 different themes. The plugin inserts the correct code on sites running only one of the themes. Is there something that needs to be in place in the theme for the plugin to operate properly?

Working: http://bbjtoday.com/
Not working: http://blogs.portorchardindependent.com/charlie/

Thank you.