Incompatablility with WPBakery Visual Composer

I am finding that when Protected Content is turned on, columns in Visual composer no longer work, as well as some formatting of some of the objects changes. Is there anything I can do to change what I assume is a CSS problem with it?

Also, I don't see where protecting menu items does anything. I'd like the item not to display to general membership at all if they are protected. Is there a setting I am missing?