Links for Multisite in Upfront

HEY!!!! First off, awesome job on Upfront...its awesome. So what I am doing, is building a template site that will get copied over to a new multisite (using cloner) when we add a new sales person to our team. What it seems I am running into is on the upfront theme, the link on the buttons keeping going back to the main page and not the sub site page. its going to /submit not to /site1/submit. Im trying to set everything up so I can automate as much as possible to just clone over to a new site each time we add someone. I would also love to hear any advice about better practices with this as well. Thanks so much for your help!