Locked into "DATABASE REPAIR MODE" once installed….

I installed the multi-db on a new WP-MU site. I did the whole 4096 db’s (I am planning something very large) but once installed I had to change a line in Fix-DB-Encoding to the correct location of wp-load.php.

However, once it loaded I always get:

WordPress can automatically look for some common database problems and repair them. Repairing can take a while, so please be patient.

Basically it seems to be locked into repair mode. Anything I can do to avoid this? It seems to cause a lot of issues…

All the best

Sean