New Blog Templates and "Misc Site Actions" Bug, Part 2

the latest version of New Blog Templates, while apparently deleting any sort of Template options in the super admin site edit screen (to address the bug reported https://premium.wpmudev.org/forums/topic/new-blog-templates-and-misc-site-actions-bug), updating the site's "Upload Space Quota" still somehow resets all theme settings.

so in my prior forum (closed now for some reason), i stated i am using 2010 weaver which allows users to do many customizations through theme settings. when super admin goes in to change a seemingly simple thing such as quota, the user's theme settings are set to default.

your help is much appreciated.

thanks.