What a wonderful plugin! We are in a testing stage and one of the other plugins we are using is 'Slider Pro'. We have noticed that when we create a new site, the actual slider we have in place does NOT get copied.
When we created the template, we 'checked' the database tables which correspond with the slider plugin, however that would WIPE OUT all data in the plugin, including for the site being 'cloned'. Since we unchecked it, it doesn't wipe the data anymore, but the slider still doesn't appear on newly created site.