New Blog Templates Not Working

Just upgraded my site to run 256 databases using multidb.

Since I upgraded, the blog creation times out every time and all the settings are not copied.

I also have a slew of errors from the plugin:

[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_value FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'multisite_content_copier_plugin_version' AND site_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, get_site_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error Table 'wp_mcc_synced_posts_relationships' already exists for query CREATE TABLE wp_mcc_synced_posts_relationships (
ID bigint(20) NOT NULL AUTO_INCREMENT,
src_blog_id bigint(20),
src_post_id bigint(20),
dest_blog_id bigint(20),
dest_post_id bigint(20),
settings text,
PRIMARY KEY (ID),
UNIQUE KEY relation (src_blog_id,src_post_id,dest_blog_id, dest_post_id),
UNIQUE KEY dest_relation (dest_blog_id, dest_post_id)
) ENGINE=MyISAM DEFAULT CHARACTER SET utf8 COLLATE utf8_general_ci made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_11, Multisite_Content_Copier_Model->create_synced_posts_relationships_table, dbDelta, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT DISTINCT src_blog_id FROM wp_mcc_queue made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_111, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT DISTINCT dest_blog_id FROM wp_mcc_queue made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_111, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT * FROM wp_mcc_queue made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_111, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT DISTINCT( blog_id ) FROM wp_mcc_blogs_groups_relationship made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_122, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ')' at line 1 for query DELETE FROM wp_mcc_blogs_groups_relationship WHERE blog_id IN () made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_122, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT ID FROM wp_mcc_blogs_groups made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, mcc_upgrade_122, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_id FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'mcc_schema_created' AND site_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->maybe_upgrade, delete_site_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_value FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'multisite_content_copier_settings' AND site_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, Multisite_Content_Copier->init_plugin, mcc_get_settings, Multisite_Content_Copier_Settings_Handler->get_settings, Multisite_Content_Copier_Settings_Handler->init_settings, get_site_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_value FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'show_nbt_integration_notice' AND site_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, MCC_NBT_Integrator->init, get_site_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT option_value FROM wp_options WHERE option_name = 'ultimatebranding_activated_modules' LIMIT 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, UltimateBrandingAdmin->initialise_ub, UltimateBrandingAdmin->transfer_old_settings, get_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_value FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'wdp_un_limit_to_user' AND site_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, WPMUDEV_Dashboard->load_branded_hooks, WPMUDEV_Dashboard->allowed_user, get_site_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT autoload FROM wp_options WHERE option_name = 'rewrite_rules' made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, custom_testimonials_register, flush_rewrite_rules, WP_Rewrite->flush_rules, delete_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT autoload FROM wp_options WHERE option_name = 'rewrite_rules' made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('init'), call_user_func_array, expertstheme_rewrite, WP_Rewrite->flush_rules, delete_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT * FROM wakeupsi_global.wp_blogs WHERE blog_id = 1 /* get_blog_details */ made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), ms_site_check, get_blog_details, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT option_value FROM wp_options WHERE option_name = '_transient_timeout_mcc_copying' LIMIT 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, get_transient, get_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT autoload FROM wp_options WHERE option_name = '_transient_mcc_copying' made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, get_transient, delete_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT autoload FROM wp_options WHERE option_name = '_transient_timeout_mcc_copying' made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, get_transient, delete_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT option_value FROM wp_options WHERE option_name = '_transient_mcc_copying' LIMIT 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, set_transient, get_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT * FROM wp_mcc_queue WHERE dest_blog_id = 1 made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, mcc_get_queue_for_blog, Multisite_Content_Copier_Model->get_queued_elements_for_blog, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT autoload FROM wp_options WHERE option_name = '_transient_mcc_copying' made by require_once('wp-load.php'), require_once('wp-config.php'), require_once('wp-settings.php'), do_action('wp_loaded'), call_user_func_array, Multisite_Content_Copier->maybe_copy_content, delete_transient, delete_option, m_wpdb->query
[18-May-2014 11:30:55 UTC] WordPress database error MySQL server has gone away for query SELECT meta_value FROM wakeupsi_global.wp_sitemeta WHERE meta_key = 'ame_pro_external_updates' AND site_id = 1 made by do_action('admin_init'), call_user_func_array, PluginUpdateChecker_1_5->maybeCheckForUpdates, PluginUpdateChecker_1_5->getUpdateState, get_site_option, m_wpdb->query