Not showing up in WP 3.1

We had the New BLog Templates plugin working perfectly under WP 3.0x but once we have upgraded to 3.1 the plugin settings no longer shows up in the new network admin screen and when I create a site the theme duplicate fields are not available. Is there something I am missing in the new version? We have New Blog Templates 1.2 installed on WP 3.1 using the Thesis 1.8 theme. The plugin is showing as installed on network plugin screen. I tried deactivating all of our other network plugins but I'm still not seeing the settings screen.

Any help would be terrific.

Thanks!