I got another problem. I've made a new store (I'm using multi site), I've selected manual payment and complete the form with user instructions. After I've saved it, the form is gone, so now I only have the general settings options (2Checkout, Google Checkout (beta), Moneybookers, PayPal Express Checkout). What's more it's that if I want to buy something, on payment information page only the title appears, the content and the continue checkout are missing.
And this is how the order confirmation email appears:
Thank you for your order CUSTOMERNAME!
Your order has been received, and any items to be shipped will be processed as soon as possible. Please refer to your Order ID (ORDERID) whenever contacting us.
Here is a confirmation of your order details:
You can track the latest status of your order here: TRACKINGURL
If order status is changed to shipped, the email has all this shortcodes replaced corectly.