Pro Site setup missing after updates

I don't check this part of the site very often ,so I'm not sure when it broke, but when I was doing some updates I noticed most of my pro sites settings have been reset to defaults.

Starting with Settings, my branding is back to default info
My Payment gateway info is gone
My pricing table is still enabled with the levels and prices (I'm guessing that is there because my level are still there), but the whole feature table is gone and I spend a lot of time creating that and the colors in the style.
All of my modules have been unchecked.

Also, http://snowpawsolutions.website/websites/ is not loading my grid for them to sign up

I've enabled support, let me know if you can fix this or if I'm going to have to through and reset everything up again.

Thanks!
Rob