Problem seeing the Widgets, Menus, Options menu items under Appearance

When logged in as a user with the Administrator role to a blog in one certain domain (pleasanton.k12.ne.us), I am unable to see the Widgets, Options, or Menus under the Appearance menu. I only see Themes. When I am logged in as Super Admin, I am able to see all these menu options for any blog/site in the domain.

I am able to see the menus from other domains when logged in as a user with the Administrator role. (We use the MU Multi-Site plugin.)

Another strange occurrence that I found while trying to troubleshoot this is, when I am logged in as a user with the Administrator role to a blog in the pleasanton.k12.ne.us domain and try to go directly to the widgets url (http://pleasanton.k12.ne.us/jeverett/wp-admin/widgets.php) it redirects me to the admin page (dashboard) of a completely different domain! (http://blog.esu10.org/wp-admin/?c=1) Wondering if this is the default it is falling back on?? Strange to say the least.

Other notes that may help us figure this out -
• Recently upgraded from MU 2.8.4 to MU 2.9.2 to MS 3.0.1
• All other domains/networks/sites work fine.
• Also have a Rewrite statement in the apache config to convert anything with blog.pleasanton.k12.ne.us to rewrite to just plain pleasanton.k12.ne.us. Although the condition is ONLY including blog.pleasanton. and I have not used that in this scenario. Coincidence?!? Hopefully.