This actually happens for all of my websites in the Hub: The Automate Report notification email that I receive after items are updated shows the Safe Upgrade Scan from the previous Automate session first – before the latest updates are made. Instead, this should show the safe upgrade scan after the updates were recently made. Otherwise what's the point of the safe upgrade scan?
For example, here is a recent email:
Aug 11, 2019 at 8:48am: Safe Upgrade scan: Site confirmed UP, no visual changes
Sep 1, 2019 at 8:07am: Updated All-in-One WP Migration from 7.5 to 7.6
Sep 1, 2019 at 8:07am: Updated Gravity Forms from 2.4.11 to 2.4.12
This shows the previous safe upgrade scan instead of the one that should happen AFTER these plugin updates.