Shipper shows wrong notice in pre-flight check

I am having trouble with Shipper Pro, it was seeing the destination site as subdomain, but both the source and destination site are subdirectory.

The origin site is set up as subdirectory however when you try to make a new site or if you look at the network settings it says it is subdomain.

I am trying to import from the destination site and in the prefight it says the destination site is subdomain.