Snapshot restore redirecting to old website

I was looking to use Snapshot to copy one of my sites in my multi-site network so that I could make it a single Wordpress install version. I used Snapshot to copy the website and then installed Wordpress on another location in my hosting. When I restored it in that new location using Snapshot it worked, however now the logo, links, etc. lead me back to my site on my multi-site network from where I copied it from.

Now I cannot even get to the backend of the single install version because once I clicked on different links that lead me from the single install version to the multi-site version it's like it confused itself and now doesn't know which is which.

So, what am I doing wrong?