Ultimate Branding Update bugs in Admin Bar

Hi

After updating the Ultimate Branding plugin today the Wordpress Logo and sub menus have reappeared even though the setting to remove it is selected. It has also prevented the removal of other menus such as the comments and new menus.
The Appearance is different on sub sites from the main site.

The new Parent menu is only visible in the main sites admin bar and is not displayed in the sub sites admin bar.

I would appreciate any help to fix this issue.

I have granted Support Access.