Utilizing "New Blog Templates" Plugin with MU Provisioning

Is there any way that I can utilize the “New Blog Templates” Plugin (https://premium.wpmudev.org/project/new-blog-template/) with my WHMCS Provisioning.

We have 6 “Blog Templates” that our customers can choose from, they have a specific theme associated and specific default content. Currently it would seem that when WHMCS provisions a new instance, it would just use whichever “Template” we have set to default.

Any way to make this work?