Wow membership seriously messes up my homepage

Hi all,

Wow I installed the member ship plugin recently and set it up on a test site and its completely weirded out my homepage. Check it out:

http://www.pathwebdesign.co.uk/

I have a custom homepage template which pulls in pages into an array and spits them out with a featured image and excerpt:

<article id="post-<?php the_ID(); ?>" <?php post_class(); ?>>
	<header class="entry-header">
		<h1 class="entry-title"><?php the_title(); ?></h1>
	</header><!-- .entry-header -->

	<div class="entry-content">
		<?php the_content(); wp_reset_query(); ?>

        <?php
		  $counter = 1;
		  $args=array(
		  'orderby' =>'rand',
		  'order' =>'asc',
		  'post_type' =>'page',
		  'post__in' => array(139,109,44,51),
		   );
		   $page_query = new WP_Query($args); ?>

		<?php while ($page_query->have_posts()) : $page_query->the_post(); ?>
			<?php if ($counter == 3 || $counter == 6 || $counter == 9 || $counter == 12 ) { ?>
            <div style="clear:left;" class="hp-section <?php the_ID(); ?>">
            <?php } else { ?>
            <div class="hp-section <?php the_ID(); ?>">
            <?php } ?>
                <h2><a href="<?php the_permalink();?>"><?php the_title();?></a></h2>
                <?php if ( has_post_thumbnail() ) { // the current post has a thumbnail ?>
                <a href="<?php the_permalink();?>"><?php the_post_thumbnail('hp-featured-page', array('class' => 'shadow')); ?></a>
                <?php } else { ?>
                <a href="<?php the_permalink();?>"><img class="shadow" src="<?php echo get_template_directory_uri(); ?>/images/hp-featured-default.jpg" title="Come on admin add this pages featured image!" /></a>
                <?php } ?>
                <?php the_excerpt(); ?>
                <?php $postid = get_the_ID(); if ( $postid==109 ) { ?>
                    <a class="readmore" href="<?php the_permalink();?>">Take the tour &rarr;</a>
                <?php } else if ( $postid==139 ) { ?>
                	<a class="readmore" href="<?php the_permalink();?>">Listen here &rarr;</a>
                <?php } else { ?>
                    <a class="readmore" href="<?php the_permalink();?>">Read more from our <?php the_title();?> page &rarr;</a>
                <?php } ?>
			</div>
		<?php $counter = $counter + 1; endwhile; ?>

	</div><!-- .entry-content -->
</article><!-- #post-<?php the_ID(); ?> -->

I have no idea whats going on as Ive set a "Free Member" level which is set to the Stranger setting. This allows all pages to be viewed by this member level.

What the hell is going on, why has it jumbled and duplicated areas of my homepage and displaying the become a member message?