WPEngine and WPMuDev Dashboard issue

Recently we were contacted by WPengine regarding a huge load time on our site. When they reviewed everything, the offending issue was the WPMUDEV Dashboard plugin. It was creating a large amount of autoloaded data on the installation into the wdp_un_updates_data table.

Once the plugin was deactivated, the site stabalized and they recommend we reach out to you to see what can be done to alleviate this problem. So I am asking if there's something that can be done so we can have the WPMUDEV Dashboard plugin on the site. Right now it's deactivated so it can work. Any help is appreciated!