We would like to use WPMU to host multiple different clients with their own unique domain name. We have WPMU configured as such using sub-domains and the domain mapper plugin to offer clients url like so http://www.clientA.com. But with the sub-domains configuration, there is only one master .htaccess. My questions are:
1. If we install WPMU using the sub-folder (instead of sub-domains) option, can we have a unique .htaccess for each sub-domain (ie http://www.wordpressmu.com/clientA/.htaccess ) for SEO purposes?